MSAD_210000.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210000.t1
Unique NameMSAD_210000.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length2313
View on JBrowse
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_1supercontigScc4a34_1:266..4826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Properties
Property NameValue
eAED0.07
QI0|0|0|1|0|0|18|0|770
AED0.07
NoteUncharacterized protein MAKER:0.0:0.07:Medtr2g084470
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210000MSAD_210000Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210000.t1MSAD_210000.t1-proteinMedicago sativapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210000.t1:cdsMSAD_210000.t1:cdsMedicago sativaCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210000.t1:exon:0MSAD_210000.t1:exon:0Medicago sativaexon
MSAD_210000.t1:exon:1MSAD_210000.t1:exon:1Medicago sativaexon
MSAD_210000.t1:exon:2MSAD_210000.t1:exon:2Medicago sativaexon
MSAD_210000.t1:exon:3MSAD_210000.t1:exon:3Medicago sativaexon
MSAD_210000.t1:exon:4MSAD_210000.t1:exon:4Medicago sativaexon
MSAD_210000.t1:exon:5MSAD_210000.t1:exon:5Medicago sativaexon
MSAD_210000.t1:exon:6MSAD_210000.t1:exon:6Medicago sativaexon
MSAD_210000.t1:exon:7MSAD_210000.t1:exon:7Medicago sativaexon
MSAD_210000.t1:exon:8MSAD_210000.t1:exon:8Medicago sativaexon
MSAD_210000.t1:exon:9MSAD_210000.t1:exon:9Medicago sativaexon
MSAD_210000.t1:exon:10MSAD_210000.t1:exon:10Medicago sativaexon
MSAD_210000.t1:exon:11MSAD_210000.t1:exon:11Medicago sativaexon
MSAD_210000.t1:exon:12MSAD_210000.t1:exon:12Medicago sativaexon
MSAD_210000.t1:exon:13MSAD_210000.t1:exon:13Medicago sativaexon
MSAD_210000.t1:exon:14MSAD_210000.t1:exon:14Medicago sativaexon
MSAD_210000.t1:exon:15MSAD_210000.t1:exon:15Medicago sativaexon
MSAD_210000.t1:exon:16MSAD_210000.t1:exon:16Medicago sativaexon
MSAD_210000.t1:exon:17MSAD_210000.t1:exon:17Medicago sativaexon


Synonyms
The feature 'MSAD_210000.t1' has the following synonyms
Synonym
maker-Scc4a34_1-snap-gene-0.0-mRNA-1
Sequence

Variant Marked-up Sequence

>MSAD_210000.t1:1-500
        tgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagtaaaaaagggtcgaaaacgagtaatagaatgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagtaaaaaagggtcgaaaacgagtaatagaatgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagtaaaaaagggtcgaaaacgagtaatagaatgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagt      

FASTA Record

The following sequence is that of the mRNA without any variants taken into account.

>MSAD_210000.t1:1-500
        tgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagtaaaaaagggtcgaaaacgagtaatagaatgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagtaaaaaagggtcgaaaacgagtaatagaatgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagtaaaaaagggtcgaaaacgagtaatagaatgcaaaaatatcccatggaagtcgtagttatgttgtttacctatccaacgaattgtcacatgctaagattcaatgcaaatcggccacattatggccttcctagt