MSAD_210011.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210011.t1
Unique NameMSAD_210011.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length363
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210011MSAD_210011Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210011.t1MSAD_210011.t1-proteinMedicago sativapolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210011.t1:exon:5MSAD_210011.t1:exon:5Medicago sativaexon
MSAD_210011.t1:exon:6MSAD_210011.t1:exon:6Medicago sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210011.t1:cdsMSAD_210011.t1:cdsMedicago sativaCDS


Synonyms
The feature 'MSAD_210011.t1' has the following synonyms
Synonym
maker-Scc4a34_9-snap-gene-0.4-mRNA-1
Sequences
The following sequences are available for this feature:

mRNA sequence

>MSAD_210011.t1 ID=MSAD_210011.t1|Name=MSAD_210011.t1|organism=Medicago sativa|type=mRNA|length=363bp
atggaagtcgtagatatgctcgttagatttcctaggaactattacatgct
tcgattcgataaggctaggccactttatgccctttttagtgaaagaaaaa
gggaaattcacttaaccccattttggccgtttttgaaaattctaaaatca
accatggaagtcgtagatatgctcgttagatttcctaggaactattacat
gcttcgattcgataaggctaggccactttatgccctttttagtgaaagaa
aaaggtcaaaaacgagtaaaatccgtaaattaacaaggaaattcactaac
cccattttggccgtttttgaaaattctaaaatcaaccatggaagtcgtag
atatgctcgttag
back to top

protein sequence of MSAD_210011.t1

>MSAD_210011.t1-protein ID=MSAD_210011.t1-protein|Name=MSAD_210011.t1|organism=Medicago sativa|type=polypeptide|length=121bp
MEVVDMLVRFPRNYYMLRFDKARPLYALFSERKREIHLTPFWPFLKILKS
TMEVVDMLVRFPRNYYMLRFDKARPLYALFSERKRSKTSKIRKLTRKFTN
PILAVFENSKINHGSRRYAR.
back to top

mRNA from alignment at Scc4a34_9:1633..2028+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSAD_210011.t1 ID=MSAD_210011.t1|Name=MSAD_210011.t1|organism=Medicago sativa|type=mRNA|length=396bp|location=Sequence derived from alignment at Scc4a34_9:1633..2028+ (Medicago sativa)
atggaagtcgtagatatgctcgttagatttcctaggaactattacatgct
tcgattcgataaggctaggccactttatgccctttttagtgaaagaaaaa
gggtcaaaaacgagtaaaatccgtaaattaacaaggaaattcacttaacc
ccattttggccgtttttgaaaattctaaaatcaaccatggaagtcgtaga
tatgctcgttagatttcctaggaactattacatgcttcgattcgataagg
ctaggccactttatgccctttttagtgaaagaaaaaggtcaaaaacgagt
aaaatccgtaaattaacaaggaaattcactaaccccattttggccgtttt
tgaaaattctaaaatcaaccatggaagtcgtagatatgctcgttag
back to top

Coding sequence (CDS) from alignment at Scc4a34_9:1633..2028+

>MSAD_210011.t1 ID=MSAD_210011.t1|Name=MSAD_210011.t1|organism=Medicago sativa|type=CDS|length=363bp|location=Sequence derived from alignment at Scc4a34_9:1633..2028+ (Medicago sativa)
atggaagtcgtagatatgctcgttagatttcctaggaactattacatgct
tcgattcgataaggctaggccactttatgccctttttagtgaaagaaaaa
gggaaattcacttaaccccattttggccgtttttgaaaattctaaaatca
accatggaagtcgtagatatgctcgttagatttcctaggaactattacat
gcttcgattcgataaggctaggccactttatgccctttttagtgaaagaa
aaaggtcaaaaacgagtaaaatccgtaaattaacaaggaaattcactaac
cccattttggccgtttttgaaaattctaaaatcaaccatggaagtcgtag
atatgctcgttag
back to top
Properties
Property NameValue
NoteUncharacterized protein MAKER:5.6:0.56:Medtr2g084470
AED0.56
QI0|0|0|1|0|0|2|0|120
eAED0.63
CADL Non-redundant FlagN
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_9supercontigScc4a34_9:1633..2028 +