MSAD_210021.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210021.t1
Unique NameMSAD_210021.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length666
View on JBrowse
Gene Expression Atlas
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_10supercontigScc4a34_10:88..858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Properties
Property NameValue
eAED0.35
QI0|0|0|0.5|1|1|2|0|221
AED0.35
NoteUncharacterized protein MAKER:0.0:0.35:Medtr7g047000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210021MSAD_210021Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210021.t1MSAD_210021.t1-proteinMedicago sativapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210021.t1:cdsMSAD_210021.t1:cdsMedicago sativaCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210021.t1:exon:0MSAD_210021.t1:exon:0Medicago sativaexon
MSAD_210021.t1:exon:1MSAD_210021.t1:exon:1Medicago sativaexon


Synonyms
The feature 'MSAD_210021.t1' has the following synonyms
Synonym
maker-Scc4a34_10-augustus-gene-0.7-mRNA-1
Sequence

Variant Marked-up Sequence

>MSAD_210021.t1:1-500
        tggatgttgattctgaggatgatcaagatgatcaagcctctgacatggttatagacactttttctgaccaaccttcaaccagcaatcctgaaaccacaaatggccaatcatcatctcatctagccattgtacctacagcttcaccaaaaccttctaaacaaccttcaccacccaccagattcctgggtccacatgtattacaaggtgtgtgtgaggacattgctgctgagttaatcaagctgatagaagggagaagtgacttgggtcacaaagtcagttatcaaaagcagtggaggagactgaatcttgatgatatacatgtccttggaacctgggtgaagaatccactgagcataagaggaagagatcctacaaattttcttcctaaatttattcaccctaaggatctggatttgtcactcctttctaaggtcaatttgagtaaggctgcacctgatctggctctagttcagaagaataaggtgttagaagaaaggaac      

FASTA Record

The following sequence is that of the mRNA without any variants taken into account.

>MSAD_210021.t1:1-500
        tggatgttgattctgaggatgatcaagatgatcaagcctctgacatggttatagacactttttctgaccaaccttcaaccagcaatcctgaaaccacaaatggccaatcatcatctcatctagccattgtacctacagcttcaccaaaaccttctaaacaaccttcaccacccaccagattcctgggtccacatgtattacaaggtgtgtgtgaggacattgctgctgagttaatcaagctgatagaagggagaagtgacttgggtcacaaagtcagttatcaaaagcagtggaggagactgaatcttgatgatatacatgtccttggaacctgggtgaagaatccactgagcataagaggaagagatcctacaaattttcttcctaaatttattcaccctaaggatctggatttgtcactcctttctaaggtcaatttgagtaaggctgcacctgatctggctctagttcagaagaataaggtgttagaagaaaggaac