MSAD_210022.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210022.t1
Unique NameMSAD_210022.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length543
View on JBrowse
Gene Expression Atlas
Gene Ontology
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_10supercontigScc4a34_10:1161..5719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene Ontology Update2017-11-12
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Properties
Property NameValue
eAED0.55
QI0|0|0|0.66|0|0.66|3|0|181
AED0.41
NoteUncharacterized protein MAKER:5.1:0.41:Medtr3g047490
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210022MSAD_210022Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210022.t1MSAD_210022.t1-proteinMedicago sativapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210022.t1:cdsMSAD_210022.t1:cdsMedicago sativaCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210022.t1:exon:8MSAD_210022.t1:exon:8Medicago sativaexon
MSAD_210022.t1:exon:9MSAD_210022.t1:exon:9Medicago sativaexon
MSAD_210022.t1:exon:10MSAD_210022.t1:exon:10Medicago sativaexon


Synonyms
The feature 'MSAD_210022.t1' has the following synonyms
Synonym
maker-Scc4a34_10-snap-gene-0.8-mRNA-1
Sequence

Variant Marked-up Sequence

>MSAD_210022.t1:1-500
        TGTATCAAAGGCTCAAGAACTACAAGAAAAGATCTAGTCAAAGGCTAAGATCAAAATCTGATTCCAAACCCAATAGctacaccaatctactgctgaaaggaaactcagctgctaagtctgcagatatggagaatcatcataggatgctcctgaaagaggaggagggtctgaccaacccaaccatgaccacaagctggcaatttacttcatggctaccttcaagaagattaatctcccaagatacattcatgcatcatttatgttgggcaataaatgaaggcatcaacaaagatagaaagcaagtaccatgtgggaggttgttgtctgaaatcttccaccaaggtaaattgctggagattctgaggagatcaaagggtgcttctgataaatgctttaaggtttctactgttgacaagattatcaatagcaggaccttatattttatgaagattatcaagaaatttcctcaatgcattccacctctcaacatgattttacct      

FASTA Record

The following sequence is that of the mRNA without any variants taken into account.

>MSAD_210022.t1:1-500
        TGTATCAAAGGCTCAAGAACTACAAGAAAAGATCTAGTCAAAGGCTAAGATCAAAATCTGATTCCAAACCCAATAGctacaccaatctactgctgaaaggaaactcagctgctaagtctgcagatatggagaatcatcataggatgctcctgaaagaggaggagggtctgaccaacccaaccatgaccacaagctggcaatttacttcatggctaccttcaagaagattaatctcccaagatacattcatgcatcatttatgttgggcaataaatgaaggcatcaacaaagatagaaagcaagtaccatgtgggaggttgttgtctgaaatcttccaccaaggtaaattgctggagattctgaggagatcaaagggtgcttctgataaatgctttaaggtttctactgttgacaagattatcaatagcaggaccttatattttatgaagattatcaagaaatttcctcaatgcattccacctctcaacatgattttacct