MSAD_210096.t1 (mRNA; Medicago sativa )

Overview
NameMSAD_210096.t1
Unique NameMSAD_210096.t1
TypemRNA
OrganismMedicago sativa (alfalfa)
Sequence length612
View on JBrowse
Gene Expression Atlas
Gene Ontology
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016740 transferase activity
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scc4a34_26supercontigScc4a34_26:318744..320183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene Ontology Update2017-11-12
Whole Genome Assembly and Annotation of Medicago sativa2016-01-05
Properties
Property NameValue
eAED0.09
QI0|0|0|0.5|1|1|2|0|203
AED0.01
NotePolynucleotidyl transferase Ribonuclease H fold MAKER:8.7:0.01:Medtr8g101620
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MSAD_210096MSAD_210096Medicago sativagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210096.t1MSAD_210096.t1-proteinMedicago sativapolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210096.t1:exon:115MSAD_210096.t1:exon:115Medicago sativaexon
MSAD_210096.t1:exon:116MSAD_210096.t1:exon:116Medicago sativaexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
MSAD_210096.t1:cdsMSAD_210096.t1:cdsMedicago sativaCDS


Synonyms
The feature 'MSAD_210096.t1' has the following synonyms
Synonym
augustus_masked-Scc4a34_26-processed-gene-3.2-mRNA-1
Sequence

Variant Marked-up Sequence

>MSAD_210096.t1:1-500
        TGAGTGATTTTTATTACGGTAACCGTAACATTGAAGATTTTCTGCAAGCTACCAAACCAGAGGACGTTGTCTCAACTCCTGAAGCTCTGCACTCTCACTCTCGTACTACCTCGTCTGGTGCTTCTAGCTGGAAAAAACCGGAGTCGGGCCTTCTTAAAGCTAACAGTGACGCAAACTTGAAGATTATAGGCACCTGGGGGCTGGGGGGCATTATCAGGAACGATGAAGGATTAGTTATGGCTACAGCTACCTGGAAATCCCTGGGTAGTAATGATCCTCTATTAGCTGAAGGTTATGCTTTGTTAAAAACGATGGTGCTAGCAAAGGAGTGTGGCTTCAAACAAATGATTTTTGAGAGTGATAGCGAGACTTTGATTCGCATGGTGAAAGATACAACTCAAAGAAACAGATCTTATCTGGGAAGTGTTATCCAGGAAATCTGGTCTACTCAATCTTATTTCGACACTTGTAATTTTGCTTTTACTCATAGGACAGGTAAT      

FASTA Record

The following sequence is that of the mRNA without any variants taken into account.

>MSAD_210096.t1:1-500
        TGAGTGATTTTTATTACGGTAACCGTAACATTGAAGATTTTCTGCAAGCTACCAAACCAGAGGACGTTGTCTCAACTCCTGAAGCTCTGCACTCTCACTCTCGTACTACCTCGTCTGGTGCTTCTAGCTGGAAAAAACCGGAGTCGGGCCTTCTTAAAGCTAACAGTGACGCAAACTTGAAGATTATAGGCACCTGGGGGCTGGGGGGCATTATCAGGAACGATGAAGGATTAGTTATGGCTACAGCTACCTGGAAATCCCTGGGTAGTAATGATCCTCTATTAGCTGAAGGTTATGCTTTGTTAAAAACGATGGTGCTAGCAAAGGAGTGTGGCTTCAAACAAATGATTTTTGAGAGTGATAGCGAGACTTTGATTCGCATGGTGAAAGATACAACTCAAAGAAACAGATCTTATCTGGGAAGTGTTATCCAGGAAATCTGGTCTACTCAATCTTATTTCGACACTTGTAATTTTGCTTTTACTCATAGGACAGGTAAT